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Tachyon (current)
Current Main Branch
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"Multiscale modeling and cinematic visualization of photosynthetic energy conversion processes from electronic to cell scales" Melih Sener, Stuart Levy, John E. Stone, AJ Christensen, Barry Isralewitz, Robert Patterson, Kalina Borkiewicz, Jeffrey Carpenter, C. Neil Hunter, Zaida Luthey-Schulten, Donna Cox J. Parallel Computing, 102, pp. 102698, 2021. Online full text available at https://doi.org/10.1016/j.parco.2020.102698
"An accessible visual narrative for the primary energy source of life from the fulldome show Birth of Planet Earth" Melih Sener, Stuart Levy, AJ Chistensen, Robert Patterson, Kalina Borkiewicz, John E. Stone, Barry Isralewitz, Jeffrey Carpenter, Donna Cox. SC'19 Visualization and Data Analytics Showcase, 2019. Winner: SC'19 Visualization and Data Analytics Showcase SC'19 Visualization and Data Analytics Showcase
"Immersive Molecular Visualization with Omnidirectional Stereoscopic Ray Tracing and Remote Rendering" John E. Stone, William R. Sherman, and Klaus Schulten. High Performance Data Analysis and Visualization Workshop, 2016 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW), pp. 1048-1057, 2016. Online full text available at http://dx.doi.org/10.1109/IPDPSW.2016.121
"Atomic Detail Visualization of Photosynthetic Membranes with GPU-Accelerated Ray Tracing" John E. Stone, Melih Sener, Kirby L. Vandivort, Angela Barragan, Abhishek Singharoy, Ivan Teo, João V. Ribeiro, Barry Isralewitz, Bo Liu, Boon Chong Goh, James C. Phillips, Craig MacGregor-Chatwin, Matthew P. Johnson, Lena F. Kourkoutis, C. Neil Hunter, and Klaus Schulten J. Parallel Computing, 55:17-27, 2016. Online full text available at http://dx.doi.org/10.1016/j.parco.2015.10.015
"Visualization of Energy Conversion Processes in a Light Harvesting Organelle at Atomic Detail" Melih Sener, John E. Stone, Angela Barragan, Abhishek Singharoy, Ivan Teo, Kirby L. Vandivort, Barry Isralewitz, Bo Liu, Boon Chong Goh, James C. Phillips, Lena F. Kourkoutis, C. Neil Hunter, and Klaus Schulten SC'14 Visualization and Data Analytics Showcase, 2014. Winner of the SC'14 Visualization and Data Analytics Showcase Online full text available at SC'14 site
"GPU-Accelerated Molecular Visualization on Petascale Supercomputing Platforms" John E. Stone, Kirby L. Vandivort, and Klaus Schulten. UltraVis'13: Proceedings of the 8th International Workshop on Ultrascale Visualization, pp. 6:1-6:8, 2013. Online full text available at http://dx.doi.org/10.1145/2535571.2535595
"Early Experiences Scaling VMD Molecular Visualization and Analysis Jobs on Blue Waters" John E. Stone, Barry Isralewitz, and Klaus Schulten. Extreme Scaling Workshop (XSW), pp. 43-50, 2013. Online full text available at http://dx.doi.org/10.1109/XSW.2013.10 Online full text available at http://www.xsede.org/web/xscale/agenda
"An Efficient Library for Parallel Ray Tracing and Animation" John E. Stone Master's Thesis, University of Missouri-Rolla, Department of Computer Science, April 1998
"Rendering of Numerical Flow Simulations Using MPI" John Stone and Mark Underwood. Second MPI Developers Conference, pages 138-141, 1996. Online full text: http://dx.doi.org/10.1109/MPIDC.1996.534105
"Numerical Flow Simulation and Rendering Using MPI" John Stone, Mark Underwood In Proceedings of the 1996 Intel Supercomputer Users Group Conference Oak Ridge National Laboratory, Knoxville TN
"An Efficient Library for Parallel Ray Tracing and Animation" John Stone In Proceedings of the 1995 Intel Supercomputer Users Group Conference Sandia National Laboratory, Albequerque NM
1.8.14